Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea

Qin, Wei1; Zheng, Yue2,3; Zhao, Feng2,3; Wang, Yulin4; Urakawa, Hidetoshi5; Martens-Habbena, Willm6; Liu, Haodong7; Huang, Xiaowu8; Zhang, Xinxu9; Nakagawa, Tatsunori10; Mende, Daniel R.11; Bollmann, Annette12; Wang, Baozhan13; Zhang, Yao14,15; Amin, Shady A.16; Nielsen, Jeppe L.17; Mori, Koji18; Takahashi, Reiji10; Armbrust, E. Virginia1; Winkler, Mari-K H.19; DeLong, Edward F.11; Li, Meng9; Lee, Po-Heng8,20; Zhou, Jizhong21,22,23,24; Zhang, Chuanlun7; Zhang, Tong4; Stahl, David A.19; Ingalls, Anitra E.1

2020-07-07

10.1038/s41396-020-0710-7

ISME Journal   影响因子和分区

1751-7362

1751-7370

Ammonia-oxidizing archaea (AOA) are among the most abundant and ubiquitous microorganisms in the ocean, exerting primary control on nitrification and nitrogen oxides emission. Although united by a common physiology of chemoautotrophic growth on ammonia, a corresponding high genomic and habitat variability suggests tremendous adaptive capacity. Here, we compared 44 diverse AOA genomes, 37 from species cultivated from samples collected across diverse geographic locations and seven assembled from metagenomic sequences from the mesopelagic to hadopelagic zones of the deep ocean. Comparative analysis identified seven major marine AOA genotypic groups having gene content correlated with their distinctive biogeographies. Phosphorus and ammonia availabilities as well as hydrostatic pressure were identified as selective forces driving marine AOA genotypic and gene content variability in different oceanic regions. Notably, AOA methylphosphonate biosynthetic genes span diverse oceanic provinces, reinforcing their importance for methane production in the ocean. Together, our combined comparative physiological, genomic, and metagenomic analyses provide a comprehensive view of the biogeography of globally abundant AOA and their adaptive radiation into a vast range of marine and terrestrial habitats.

SCI

英语

NI论文

其他

National Natural Science Foundation of China[21777155][21322703][41530105][91851210][41907027][U1805242] ; USA National Science Foundation[OCE-1046017][DEB-1664052] ; Simons Foundation grants (SCOPE Award)[329108] ; Simons Postdoctoral Fellowship in Marine Microbial Ecology[548565] ; Florida Agricultural Experiment Station (Hatch project)[FLA-FTL-005680] ; UF IFAS Early Career award[00129069] ; Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology[ZDSYS201802081843490] ; Novo Nordisk Foundation[NNF16OC0021818]

Environmental Sciences & Ecology ; Microbiology

Ecology ; Microbiology

WOS:000546300900001

NATURE PUBLISHING GROUP

Web of Science

1.Univ Washington, Sch Oceanog, Seattle, WA 98195 USA
2.Chinese Acad Sci, Inst Urban Environm, CAS Key Lab Urban Pollutant Convers, Xiamen, Peoples R China
3.Univ Chinese Acad Sci, Beijing, Peoples R China
4.Univ Hong Kong, Ctr Environm Engn Res, Dept Civil Engn, Environm Microbiome Engn & Biotechnol Lab, Hong Kong, Peoples R China
5.Florida Gulf Coast Univ, Dept Ecol & Environm Studies, Ft Myers, FL USA
6.Univ Florida, Ft Lauderdale Res & Educ Ctr, Dept Microbiol & Cell Sci, Inst Food & Agr Sci, Davie, FL USA
7.Southern Univ Sci & Technol, Dept Ocean Sci & Engn, Shenzhen Key Lab Marine Archaea Geoom, Shenzhen, Peoples R China
8.Hong Kong Polytech Univ, Dept Civil & Environm Engn, Hong Kong, Peoples R China
9.Shenzhen Univ, Inst Adv Study, Shenzhen Key Lab Marine Microbiome Engn, Shenzhen, Peoples R China
10.Nihon Univ, Coll Bioresource Sci, Fujisawa, Kanagawa, Japan
11.Univ Hawaii, Daniel K Inouye Ctr Microbial Oceanog Res & Educ, Honolulu, HI 96822 USA
12.Miami Univ, Dept Microbiol, Oxford, OH 45056 USA
13.Nanjing Agr Univ, Coll Life Sci, Key Lab Microbiol Agr Environm, Minist Agr, Nanjing, Peoples R China
14.Xiamen Univ, State Key Lab Marine Environm Sci, Xiamen, Peoples R China
15.Xiamen Univ, Coll Ocean & Earth Sci, Xiamen, Peoples R China
16.New York Univ Abu Dhabi, Dept Biol, Abu Dhabi, U Arab Emirates
17.Aalborg Univ, Dept Chem & Biosci, Aalborg, Denmark
18.Natl Inst Technol & Evaluat NITE, NITE Biol Resource Ctr NBRC, Kisarazu, Chiba, Japan
19.Univ Washington, Dept Civil & Environm Engn, Seattle, WA 98195 USA
20.Imperial Coll London, Dept Civil & Environm Engn, London, England
21.Univ Oklahoma, Dept Microbiol & Plant Biol, Inst Environm Genom, Norman, OK USA
22.Univ Oklahoma, Sch Civil Engn & Environm Sci, Norman, OK USA
23.Lawrence Berkeley Natl Lab, Earth & Environm Sci, Berkeley, CA USA
24.Tsinghua Univ, Sch Environm, Beijing, Peoples R China

Qin, Wei,Zheng, Yue,Zhao, Feng,et al. Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea[J]. ISME Journal,2020,14(10):2595-2609.

Qin, Wei.,Zheng, Yue.,Zhao, Feng.,Wang, Yulin.,Urakawa, Hidetoshi.,...&Ingalls, Anitra E..(2020).Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea.ISME Journal,14(10),2595-2609.

Qin, Wei,et al."Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea".ISME Journal 14.10(2020):2595-2609.