南方科技大学知识苑(SUSTech KC): Protocol to analyze population structure and migration history based on human genome variation data

题名	Protocol to analyze population structure and migration history based on human genome variation data
作者	Zhao，Zicheng 1,2; Wang，Yinan 3,4 ; Zhang，Zhe 5; Li，Shuai Cheng 1
通讯作者	Li，Shuai Cheng
发表日期	2023-03-17
DOI	10.1016/j.xpro.2022.101928
发表期刊	STAR Protocols 影响因子和分区
ISSN	2666-1667
EISSN	2666-1667
卷号	4 期号:1
摘要	We describe a protocol to integrate genome variation data from different datasets and explore the population structure and migration history of human populations. This protocol provides semi-automated scripts to perform and visualize the effect of variant filtering strategy on eliminating batch effects, principal component analysis, ancestry component analysis, historical population effective size inference, and migration and isolation analysis based on independent biallelic SNPs, genotype likelihoods, and haplotypes. The protocol can be adapted to variation data from other sources. For complete details on the use and execution of this protocol, please refer to Zhang et al. (2022).
关键词	Bioinformatics Computer sciences Evolutionary biology Genomics
相关链接	[Scopus记录]
收录类别	ESCI
语种	英语
学校署名	其他
WOS研究方向	Biochemistry & Molecular Biology
WOS类目	Biochemical Research Methods
WOS记录号	WOS:001066166400001
出版者	ELSEVIER
Scopus记录号	2-s2.0-85144081785
来源库	Scopus
引用统计	被引频次[WOS]：2
成果类型	期刊论文
条目标识符	http://sustech.caswiz.com/handle/2SGJ60CL/442613
专题	南方科技大学医学院工学院_计算机科学与工程系
作者单位	1.Department of Computer Science,City University of Hong Kong,Kowloon,999077,Hong Kong 2.Shenzhen Byoryn Technology Co.,Ltd.,Shenzhen,518000,China 3.Peking University Shenzhen Hospital,Shenzhen,1120 Lianhua Road,518036,China 4.School of Medicine,Southern University of Science and Technology,Shenzhen,1088 Xueyuan Avenue,518055,China 5.Department of Cardiology,Zhuhai People's Hospital (Zhuhai Hospital Affiliated with Jinan University),Zhuhai,No. 79 Kanning Road,519000,China
推荐引用方式 GB/T 7714	Zhao，Zicheng,Wang，Yinan,Zhang，Zhe,et al. Protocol to analyze population structure and migration history based on human genome variation data[J]. STAR Protocols,2023,4(1).
APA	Zhao，Zicheng,Wang，Yinan,Zhang，Zhe,&Li，Shuai Cheng.(2023).Protocol to analyze population structure and migration history based on human genome variation data.STAR Protocols,4(1).
MLA	Zhao，Zicheng,et al."Protocol to analyze population structure and migration history based on human genome variation data".STAR Protocols 4.1(2023).