中文版 | English
题名

整合素及其潜在配体的纯化与生化表征研究

其他题名
PURIFICATION AND BIOCHEMICAL CHARACTERIZATION OF INTEGRIN AND INTEGRIN-LIGANDS IDENTIFICATION
姓名
姓名拼音
CHEN Yihong
学号
12032137
学位类型
硕士
学位专业
0710 生物学
学科门类/专业学位类别
07 理学
导师
余聪
导师单位
化学生物学系
论文答辩日期
2023-05-05
论文提交日期
2023-07-03
学位授予单位
南方科技大学
学位授予地点
深圳
摘要

整合素是一类重要的细胞表面粘附受体。整合素负责细胞内外的信息交换,通过感受细胞由内向外或者由外向内“双向信号”,整合素被激活,进而招募大量的细胞内蛋白质,介导粘着斑的形成。因此,整合素在癌症发生、血管生成、血栓形成、炎症、骨质疏松症和病毒入侵等过程中发挥重要作用。了解整合素及其配体的结构和功能,有助于推动对于整合素如何通过信号传导,调控粘着斑组装和解聚以及各种生理活动具体分子机制的理解。在发育的不同阶段和不同组织中,整合素以不同的α 亚基和β 亚基组成异源二聚体。在本课题中,我们在 HEK293F 细胞和 High Five 昆虫细胞中表达了多种整合素二聚体 αVβ1、整合素 αVβ3、整合素 αVβ5、整合素 α2β1 和整合素 α5β1 细胞外结构域,并通过镍柱亲和层析和快速液相色谱层析技术纯化得到了整合素异源二聚体。通过进一步优化蛋白表达条件、设计点突变、设计蛋白截短体和插入Acid-Base 多肽等方法,我们最终纯化得到了稳定均一的整合素异源二聚体。同时,我们纯化了骨骼重塑相关因子irisin 和 SARS-CoV-2 受体结合结构域,检测它们与整合素潜在的结合能力。通过透射电镜,我们评估了整合素 α5β1 负染样品的均一性,并初步观察到了整合素 α5β1 的结构特征。该项工作优化了多种整合素的纯化,将为后续解析整合素的结构、了解整合素在调控粘着斑蛋白组装和信号传导过程中的结构和功能提供帮助。

关键词
语种
中文
培养类别
独立培养
入学年份
2020
学位授予年份
2023-06
参考文献列表

[1] ARNAOUT M, MAHALINGAM B, XIONG J P. Integrin structure, allostery, and bidirectionalsignaling[J]. Annu. Rev. Cell Dev. Biol., 2005, 21: 381-410.
[2] HYNES R O. Integrins: bidirectional, allosteric signaling machines[J]. cell, 2002, 110(6):673-687.
[3] TAKAGI J, PETRE B M, WALZ T, et al. Global conformational rearrangements in integrinextracellular domains in outside-in and inside-out signaling[J]. Cell, 2002, 110(5): 599-611.
[4] LU F, ZHU L, BROMBERGER T, et al. Mechanism of integrin activation by talin and itscooperation with kindlin[J]. Nature Communications, 2022, 13(1): 2362.
[5] WINOGRAD-KATZ S E, FÄSSLER R, GEIGER B, et al. The integrin adhesome: from genes and proteins to human disease[J]. Nature reviews Molecular cell biology, 2014, 15(4): 273-288.
[6] GOODMAN S L, PICARD M. Integrins as therapeutic targets[J]. Trends in pharmacological sciences, 2012, 33(7): 405-412.
[7] SLACK R, MACDONALD S, ROPER J, et al. Emerging therapeutic opportunities for integrin inhibitors[J]. Nature Reviews Drug Discovery, 2022, 21(1): 60-78.
[8] GABRIEL H M, OLIVEIRA E I. Role of abciximab in the treatment of coronary artery disease [J]. Expert Opinion on Biological Therapy, 2006, 6(9): 935-942.
[9] VAN HOVE I, HU T T, BEETS K, et al. Targeting RGD-binding integrins as an integrativetherapy for diabetic retinopathy and neovascular age-related macular degeneration[J]. Progress in retinal and eye research, 2021, 85: 100966.
[10] MAAK S, NORHEIM F, DREVON C A, et al. Progress and Challenges in the Biology ofFNDC5 and Irisin[J]. Endocrine reviews, 2021, 42(4): 436-456.
[11] BUCCOLIERO C, ORANGER A, COLAIANNI G, et al. The effect of Irisin on bone cells invivo and in vitro[J]. Biochemical Society Transactions, 2021, 49(1): 477-484.
[12] HO M Y, WANG C Y. Role of irisin in myocardial infarction, heart failure, and cardiac hypertrophy[J]. Cells, 2021, 10(8): 2103.
[13] ZAIDEL-BAR R, BALLESTREM C, KAM Z, et al. Early molecular events in the assembly of matrix adhesions at the leading edge of migrating cells[J]. Journal of cell science, 2003, 116(22): 4605-4613.
[14] MISHRA Y G, MANAVATHI B. Focal adhesion dynamics in cellular function and disease[J]. Cellular signalling, 2021, 85: 110046.
[15] GEIGER B, SPATZ J P, BERSHADSKY A D. Environmental sensing through focal adhesions [J]. Nature reviews Molecular cell biology, 2009, 10(1): 21-33.
[16] OKTAY M, WARY K K, DANS M, et al. Integrin-mediated activation of focal adhesion kinase is required for signaling to Jun NH2-terminal kinase and progression through the G1 phase of the cell cycle[J]. The Journal of cell biology, 1999, 145(7): 1461-1470.
[17] VAN ERP A E, HILLEBRANDT-ROEFFEN M H, VAN BREE N F, et al. Targeting the FAKSrc Complex in Desmoplastic Small Round Cell Tumors, Ewing Sarcoma, and Rhabdomyosarcoma[J]. Sarcoma, 2022, 2022.
[18] TAKADA Y, YE X, SIMON S. The integrins[J]. Genome biology, 2007, 8: 1-9.
[19] COOPER J A. Membrane-associated tyrosine kinases as molecular switches[C]//Seminars in Cell Biology: volume 5. Elsevier, 1994: 377-387.
[20] ARCANGELI A, BECCHETTI A. Integrin structure and functional relation with ion channels[J]. Integrins and Ion Channels: Molecular Complexes and Signaling, 2010: 1-7.
[21] HUGHES P E, PFAFF M. Integrin affinity modulation[J]. Trends in cell biology, 1998, 8(9):359-364.
[22] TUCKWELL D, HUMPHRIES M. Integrin–collagen binding[C]//Seminars in Cell & Developmental Biology: volume 7. Elsevier, 1996: 649-657.
[23] EMSLEY J, KNIGHT C G, FARNDALE R W, et al. Structural basis of collagen recognition by integrin 𝛼2𝛽1[J]. Cell, 2000, 101(1): 47-56.
[24] NISHIUCHI R, TAKAGI J, HAYASHI M, et al. Ligand-binding specificities of laminin-binding integrins: A comprehensive survey of laminin–integrin interactions using recombinant 𝛼3𝛽1, 𝛼6𝛽1, 𝛼7𝛽1 and 𝛼6𝛽4 integrins[J]. Matrix Biology, 2006, 25(3): 189-197.
[25] ZHANG Y, WANG H. Integrin signalling and function in immune cells[J]. Immunology, 2012,135(4): 268-275.
[26] BARCZYK M, CARRACEDO S, GULLBERG D. Integrins[J]. Cell and tissue research, 2010,339: 269-280.
[27] BANNO A, GINSBERG M H. Integrin activation[J]. Biochemical Society Transactions, 2008,36(2): 229-234.
[28] HUANG C, ZANG Q, TAKAGI J, et al. Structural and functional studies with antibodies to the integrin 𝛽2 subunit: a model for the I-like domain[J]. Journal of Biological Chemistry, 2000,275(28): 21514-21524.
[29] KOLASANGIANI R, BIDONE T C, SCHWARTZ M A. Integrin Conformational Dynamicsand Mechanotransduction[J]. Cells, 2022, 11(22): 3584.
[30] NILAND S, RISCANEVO A X, EBLE J A. Matrix metalloproteinases shape the tumor microenvironment in cancer progression[J]. International journal of molecular sciences, 2022, 23(1): 146.
[31] CALDERWOOD D A. Integrin activation[J]. Journal of cell science, 2004, 117(5): 657-666.
[32] ROTHMAN J E. The gripping story of integrins[J]. Cell, 2022, 185(21): 3844-3848.
[33] ANTHIS N J, CAMPBELL I D. The tail of integrin activation[J]. Trends in biochemicalsciences, 2011, 36(4): 191-198.
[34] LI H, DENG Y, SUN K, et al. Structural basis of kindlin-mediated integrin recognition and activation[J]. Proceedings of the National Academy of Sciences, 2017, 114(35): 9349-9354.
[35] SONG G, XU S, ZHANG H, et al. TIMP1 is a prognostic marker for the progression and metastasis of colon cancer through FAK-PI3K/AKT and MAPK pathway[J]. Journal of Experimental & Clinical Cancer Research, 2016, 35(1): 1-12.
[36] ZHONG C, TAO B, TANG F, et al. Remodeling cancer stemness by collagen/fibronectin via the AKT and CDC42 signaling pathway crosstalk in glioma[J]. Theranostics, 2021, 11(4): 1991.
[37] OLDBERG A, FRANZÉN A, HEINEGÅRD D. Cloning and sequence analysis of rat bonesialoprotein (osteopontin) cDNA reveals an Arg-Gly-Asp cell-binding sequence.[J]. Proceedings of the National Academy of Sciences, 1986, 83(23): 8819-8823.
[38] ZHAO G, GONG L, SU D, et al. Cullin5 deficiency promotes small-cell lung cancer metastasis by stabilizing integrin 𝛽1[J]. The Journal of Clinical Investigation, 2019, 129(3): 972-987.
[39] REED N, JO H, CHEN C, et al. The alphavbeta1 integrin plays a critical in vivo role in tissue fibrosis. Sci Transl Med 7 (288): 288ra279[Z]. 2015.
[40] BODARY S, MCLEAN J W. The integrin beta 1 subunit associates with the vitronectin receptor alpha v subunit to form a novel vitronectin receptor in a human embryonic kidney cell line.[J]. Journal of Biological Chemistry, 1990, 265(11): 5938-5941.
[41] JIAO Y, FENG X, ZHAN Y, et al. Matrix metalloproteinase-2 promotes 𝛼v𝛽3 integrin-mediated adhesion and migration of human melanoma cells by cleaving fibronectin[M]. Public Library of Science San Francisco, USA, 2012.
[42] WEI J, MARISETTY A, SCHRAND B, et al. Osteopontin mediates glioblastoma-associated macrophage infiltration and is a potential therapeutic target[J]. The Journal of clinical investigation,2019, 129(1): 137-149.
[43] SCHIESSER J V, LOUDOVARIS T, THOMAS H E, et al. Integrin 𝛼v𝛽5 heterodimer is aspecific marker of human pancreatic beta cells[J]. Scientific Reports, 2021, 11(1): 8315.
[44] RAINERO E, HOWE J D, CASWELL P T, et al. Ligand-occupied integrin internalization links nutrient signaling to invasive migration[J]. Cell reports, 2015, 10(3): 398-413.
[45] DUFOUR C R, SCHOLTES C, YAN M, et al. The mTOR chromatin-bound interactome in prostate cancer[J]. Cell Reports, 2022, 38(12): 110534.
[46] YANG M, LU Y, PIAO W, et al. The translational regulation in mTOR pathway[J].Biomolecules, 2022, 12(6): 802.
[47] LAWRENCE P, LAROCCO M, BAXT B, et al. Examination of soluble integrin resistant mutants of foot-and-mouth disease virus[J]. Virology journal, 2013, 10(1): 1-13.
[48] CHAKRABORTY S, VEETTIL M V, CHANDRAN B. Kaposi’s sarcoma associated herpesvirus entry into target cells[J]. Frontiers in microbiology, 2012, 3: 6.
[49] CHESHENKO N, TREPANIER J B, GONZÁLEZ P A, et al. Herpes simplex virus type 2glycoprotein H interacts with integrin 𝛼v𝛽3 to facilitate viral entry and calcium signaling inhuman genital tract epithelial cells[J]. Journal of virology, 2014, 88(17): 10026-10038.
[50] VEESLER D, CUPELLI K, BURGER M, et al. Single-particle EM reveals plasticity of interactions between the adenovirus penton base and integrin 𝛼V𝛽3[J]. Proceedings of the National Academy of Sciences, 2014, 111(24): 8815-8819.
[51] AKSOY P, GOTTSCHALK E Y, MENESES P I. HPV entry into cells[J]. Mutation Research/Reviews in Mutation Research, 2017, 772: 13-22.
[52] NARANATT P P, AKULA S M, ZIEN C A, et al. Kaposi’s sarcoma-associated herpesvirus induces the phosphatidylinositol 3-kinase-PKC-𝜁-MEK-ERK signaling pathway in target cells early during infection: implications for infectivity[J]. Journal of virology, 2003, 77(2): 1524-1539.
[53] BARILLARI G, SGADARI C, FIORELLI V, et al. The Tat Protein of Human Immunodeficiency Virus Type-1 Promotes Vascular Cell Growth and Locomotion by Engaging the Integrins and by Mobilizing Sequestered Basic Fibroblast Growth Factor[J]. Blood, The Journal of the American Society of Hematology, 1999, 94(2): 663-672.
[54] SCHORNBERG K L, SHOEMAKER C J, DUBE D, et al. 𝛼5𝛽1-Integrin controls ebolavirus entry by regulating endosomal cathepsins[J]. Proceedings of the National Academy of Sciences, 2009, 106(19): 8003-8008.
[55] LA LINN M, EBLE J A, LÜBKEN C, et al. An arthritogenic alphavirus uses the 𝛼1𝛽1 integrin collagen receptor[J]. Virology, 2005, 336(2): 229-239.
[56] SALMELA M, JOKINEN J, TIITTA S, et al. Integrin 𝛼2𝛽1 in nonactivated conformation can induce focal adhesion kinase signaling[J]. Scientific reports, 2017, 7(1): 1-11.
[57] LIU S, CUI F, NING K, et al. Role of irisin in physiology and pathology[J]. Frontiers inEndocrinology, 2022, 13.
[58] ZERLOTIN R, ORANGER A, PIGNATARO P, et al. Irisin and secondary osteoporosis inhumans[J]. International Journal of Molecular Sciences, 2022, 23(2): 690.
[59] SCHUMACHER M A, CHINNAM N, OHASHI T, et al. The structure of irisin reveals a novel intersubunit 𝛽-sheet fibronectin type III (FNIII) dimer: implications for receptor activation[J]. Journal of Biological Chemistry, 2013, 288(47): 33738-33744.
[60] STORLINO G, COLAIANNI G, SANESI L, et al. Irisin prevents disuse-induced osteocyteapoptosis[J]. Journal of bone and mineral research, 2020, 35(4): 766-775.
[61] KIM H, WRANN C D, JEDRYCHOWSKI M, et al. Irisin mediates effects on bone and fat via 𝛼V integrin receptors[J]. Cell, 2018, 175(7): 1756-1768.
[62] DAKAL T C. SARS-CoV-2 attachment to host cells is possibly mediated via RGD-integrin interaction in a calcium-dependent manner and suggests pulmonary EDTA chelation therapy as a novel treatment for COVID 19[J]. Immunobiology, 2021, 226(1): 152021.
[63] NORRIS E G, PAN X S, HOCKING D C. Receptor-binding domain of SARS-CoV-2 is afunctional 𝛼v-integrin agonist[J]. Journal of Biological Chemistry, 2023: 102922.
[64] SIMONS P, RINALDI D A, BONDU V, et al. Integrin activation is an essential component of SARS-CoV-2 infection[J]. Scientific reports, 2021, 11(1): 20398.
[65] YIN W, XU Y, XU P, et al. Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody[J]. Science, 2022, 375(6584): 1048-1053.
[66] HUSSEIN H A, WALKER L R, ABDEL-RAOUF U M, et al. Beyond RGD: virus interactions with integrins[J]. Archives of virology, 2015, 160: 2669-2681.
[67] GIANCOTTI F G, TARONE G. Positional control of cell fate through joint integrin/receptor protein kinase signaling[J]. Annual review of cell and developmental biology, 2003, 19(1):173-206.
[68] MIŽÍKOVÁ I, MORTY R E. The extracellular matrix in bronchopulmonary dysplasia: target and source[J]. Frontiers in medicine, 2015, 2: 91.
[69] MÉSZÁROS B, SÁMANO-SÁNCHEZ H, ALVARADO-VALVERDE J, et al. Short linearmotif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications[J]. Science signaling, 2021, 14(665): eabd0334.
[70] LAN J, HE X, REN Y, et al. Structural insights into the SARS-CoV-2 Omicron RBD-ACE2 interaction[J]. Cell research, 2022, 32(6): 593-595.
[71] RIGOT V, ANDREÂ F, LEHMANN M, et al. Biogenesis of a6b4 integrin in a human colonic adenocarcinoma cell line[Z].
[72] KRAMMER A, CRAIG D, THOMAS W E, et al. A structural model for force regulated integrin binding to fibronectin’s RGD-synergy site[J]. Matrix Biology, 2002, 21(2): 139-147.

所在学位评定分委会
生物学
国内图书分类号
Q51
来源库
人工提交
成果类型学位论文
条目标识符http://sustech.caswiz.com/handle/2SGJ60CL/545006
专题生命科学学院_生物系
推荐引用方式
GB/T 7714
陈以红. 整合素及其潜在配体的纯化与生化表征研究[D]. 深圳. 南方科技大学,2023.
条目包含的文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可 操作
12032137-陈以红-生物系.pdf(3430KB)----限制开放--请求全文
个性服务
原文链接
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
导出为Excel格式
导出为Csv格式
Altmetrics Score
谷歌学术
谷歌学术中相似的文章
[陈以红]的文章
百度学术
百度学术中相似的文章
[陈以红]的文章
必应学术
必应学术中相似的文章
[陈以红]的文章
相关权益政策
暂无数据
收藏/分享
所有评论 (0)
[发表评论/异议/意见]
暂无评论

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。