Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

Renton，Angela I.1,2; Dao，Thuy T.2; Johnstone，Tom3; Civier，Oren3; Sullivan，Ryan P.4; White，David J.3; Lyons，Paris3; Slade，Benjamin M.3; Abbott，David F.5; Amos，Toluwani J.6; Bollmann，Saskia2; Botting，Andy7; Campbell，Megan E.J.8,9; Chang，Jeryn10; Close，Thomas G.4; Dörig，Monika11; Eckstein，Korbinian2; Egan，Gary F.12,13; Evas，Stefanie14,15; Flandin，Guillaume16; Garner，Kelly G.17,18; Garrido，Marta I.19,20; Ghosh，Satrajit S.21,22; Grignard，Martin23; Halchenko，Yaroslav O.24; Hannan，Anthony J.5; Heinsfeld，Anibal S.25; Huber，Laurentius26; Hughes，Matthew E.3; Kaczmarzyk，Jakub R.27,28; Kasper，Lars29,30; Kuhlmann，Levin31; Lou，Kexin2,32; Mantilla-Ramos，Yorguin Jose33; Mattingley，Jason B.1,18; Meier，Michael L.11; Morris，Jo7; Narayanan，Akshaiy34; Pestilli，Franco25; Puce，Aina35; Ribeiro，Fernanda L.2; Rogasch，Nigel C.12,36,37; Rorden，Chris38; Schira，Mark M.39; Shaw，Thomas B.2,40,41; Sowman，Paul F.42; Spitz，Gershon43,44; Stewart，Ashley W.2,45; Ye，Xincheng2; Zhu，Judy D.42; Narayanan，Aswin40; Bollmann，Steffen2,40,45,46

2024

10.1038/s41592-023-02145-x

Nature Methods   影响因子和分区

1548-7091

1548-7105

Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform (https://www.neurodesk.org/) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.

SCI

英语

其他

National Institutes of Health[LP200301393] ; National Institute of Biomedical Imaging and BioEngineering[IC170100035] ; null[P41EB019936] ; Australian Research Council[LP200301393]

Biochemistry & Molecular Biology

Biochemical Research Methods

WOS:001138203700004

NATURE PORTFOLIO

BIOLOGY & BIOCHEMISTRY

2-s2.0-85181700402

Scopus

1.The University of Queensland,Queensland Brain Institute,St Lucia,Brisbane,Australia
2.The University of Queensland,School of Electrical Engineering and Computer Science,St Lucia,Brisbane,Australia
3.Centre for Mental Health & Brain Sciences,Swinburne University of Technology,Hawthorn,Australia
4.The University of Sydney,School of Biomedical Engineering,Sydney,Australia
5.The Florey Institute of Neuroscience and Mental Health,The University of Melbourne,Melbourne,Australia
6.School of Life Science and Technology,University of Electronic Science and Technology,Chengdu,China
7.Australian Research Data Commons (ARDC),Sydney,Australia
8.School of Psychological Sciences,University of Newcastle,Newcastle,Australia
9.Hunter Medical Research Institute Imaging Centre,Newcastle,Australia
10.The University of Queensland,School of Biomedical Sciences,St Lucia,Brisbane,Australia
11.Integrative Spinal Research,Department of Chiropractic Medicine,Balgrist University Hospital,University of Zurich,Zurich,Switzerland
12.The Turner Institute for Brain and Mental Health,School of Psychological Sciences,Monash University,Melbourne,Australia
13.Monash Biomedical Imaging,Monash University,Melbourne,Australia
14.School of Psychology,University of Adelaide,Adelaide,Australia
15.Human Health,Health & Biosecurity,CSIRO,Adelaide,Australia
16.Wellcome Centre for Human Neuroimaging,University College London,London,United Kingdom
17.School of Psychology,University of New South Wales,Sydney,Australia
18.The University of Queensland,School of Psychology,St Lucia,Brisbane,Australia
19.Melbourne School of Psychological Sciences,he University of Melbourne,Melbourne,Australia
20.Graeme Clark Institute for Biomedical Engineering,The University of Melbourne,Melbourne,Australia
21.McGovern Institute for Brain Research,Massachusetts Institute of Technology,Cambridge,United States
22.Department of Otolaryngology - Head and Neck Surgery,Harvard Medical School,Boston,United States
23.GIGA CRC In-Vivo Imaging,University of Liège,Liège,Belgium
24.Center for Open Neuroscience,Department of Psychological and Brain Sciences,Dartmouth College,Hanover,United States
25.Department of Psychology,Center for Perceptual Systems,Institute for Neuroscience,Center For Learning and Memory,The University of Texas at Austin,Austin,United States
26.National Institute of Mental Health (NIMH),National Institutes Health,Bethesda,United States
27.Department of Biomedical Informatics,Stony Brook University,New York,United States
28.Simons Center for Quantitative Biology,Cold Spring Harbor Laboratory,New York,United States
29.BRAIN-TO Lab,Krembil Brain Institute,University Health Network,Toronto,Canada
30.Translational Neuromodeling Unit,Institute for Biomedical Engineering,University of Zurich and ETH Zurich,Zurich,Switzerland
31.Department of Data Science and AI,Faculty of Information Technology,Monash University,Melbourne,Australia
32.Department of Biomedical Engineering,Southern University of Science and Technology,Shenzhen,China
33.Grupo Neuropsicología y Conducta (GRUNECO),Facultad de Medicina,Universidad de Antioquia,Medellín,Colombia
34.School of Computer Science,The University of Auckland,Auckland,New Zealand
35.Department of Psychological and Brain Sciences,Indiana University,Bloomington,United States
36.Discipline of Psychiatry,Adelaide Medical School,University of Adelaide,Adelaide,Australia
37.Hopwood Centre for Neurobiology,Lifelong Health Theme,South Australian Health and Medical Research Institute (SAHMRI),Adelaide,Australia
38.McCausland Center for Brain Imaging,Department of Psychology,University of South Carolina,Columbia,United States
39.School of Psychology,University of Wollongong,Wollongong,Australia
40.The University of Queensland,Centre for Advanced Imaging,St Lucia,Brisbane,Australia
41.Department of Neurology,Royal Brisbane and Women’s Hospital,Brisbane,Australia
42.Macquarie University,School of Psychological Sciences,Sydney,Australia
43.Department of Neuroscience,Central Clinical School,Faculty of Medicine,Nursing and Health Sciences,Monash University,Melbourne,Australia
44.Monash-Epworth Rehabilitation Research Centre,Turner Institute for Brain and Mental Health,School of Psychological Sciences,Monash University,Melbourne,Australia
45.ARC Training Centre for Innovation in Biomedical Imaging Technology,The University of Queensland,Brisbane,Australia
46.Queensland Digital Health Centre,The University of Queensland,Brisbane,Australia

Renton，Angela I.,Dao，Thuy T.,Johnstone，Tom,et al. Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging[J]. Nature Methods,2024,21(2).

Renton，Angela I..,Dao，Thuy T..,Johnstone，Tom.,Civier，Oren.,Sullivan，Ryan P..,...&Bollmann，Steffen.(2024).Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.Nature Methods,21(2).

Renton，Angela I.,et al."Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging".Nature Methods 21.2(2024).