Recovery of 1887 metagenome-assembled genomes from the South China Sea

Xu，Shuaishuai1,2; Huang，Hailong3; Chen，Songze1,4; Muhammad，Zain Ul Arifeen1; Wei，Wenya5,6; Xie，Wei5,6; Jiang，Haibo3,6; Hou，Shengwei1

2024-12-01

10.1038/s41597-024-03050-4

Scientific Data   影响因子和分区

2052-4463

The South China Sea (SCS) is a marginal sea characterized by strong land-sea biogeochemical interactions. SCS has a distinctive landscape with a multitude of seamounts in its basin. Seamounts create “seamount effects” that influence the diversity and distribution of planktonic microorganisms in the surrounding oligotrophic waters. Although the vertical distribution and community structure of marine microorganisms have been explored in certain regions of the global ocean, there is a lack of comprehensive microbial genomic surveys for uncultured microorganisms in SCS, particularly in the seamount regions. Here, we employed a metagenomic approach to study the uncultured microbial communities sampled from the Xianbei seamount region to the North Coast waters of SCS. A total of 1887 non-redundant prokaryotic metagenome-assembled genomes (MAGs) were reconstructed, of which, 153 MAGs were classified as high-quality MAGs based on the MIMAG standards. The community structure and genomic information provided by this dataset could be used to analyze microbial distribution and metabolism in the SCS.

SCI

英语

第一 ; 通讯

2-s2.0-85185520016

Scopus

1.Department of Ocean Science & amp; Engineering,Southern University of Science and Technology,Shenzhen,518055,China
2.College of Life Science and Technology,Jinan University,Guangzhou,510632,China
3.School of Marine Sciences,Ningbo University,Ningbo,315211,China
4.Shenzhen Ecological and Environmental Monitoring Center of Guangdong Province,Shenzhen,518049,China
5.School of Marine Sciences,Sun Yat-sen University,Guangzhou,510632,China
6.Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai),Zhuhai,519000,China

Xu，Shuaishuai,Huang，Hailong,Chen，Songze,et al. Recovery of 1887 metagenome-assembled genomes from the South China Sea[J]. Scientific Data,2024,11(1).

Xu，Shuaishuai.,Huang，Hailong.,Chen，Songze.,Muhammad，Zain Ul Arifeen.,Wei，Wenya.,...&Hou，Shengwei.(2024).Recovery of 1887 metagenome-assembled genomes from the South China Sea.Scientific Data,11(1).

Xu，Shuaishuai,et al."Recovery of 1887 metagenome-assembled genomes from the South China Sea".Scientific Data 11.1(2024).