中文版 | English
题名

甲基化酶 METTL7B 对肺腺癌的发生转移作用机制研究

其他题名
Mechanism of methylase METTL7B on the development and metastasis of lung adenocarcinoma
姓名
姓名拼音
LIU Cheng
学号
12133129
学位类型
硕士
学位专业
0710 生物学
学科门类/专业学位类别
07 理学
导师
王玉琨
导师单位
药理学系
论文答辩日期
2024-05-30
论文提交日期
2024-07-02
学位授予单位
南方科技大学
学位授予地点
深圳
摘要

背景 肺腺癌是临床上常见恶性肿瘤之一,随着科技的进步,患者的生存率大 大提高,但是仍有相当一部分患者临床效果不佳,且肿瘤发生转移和复发。 近些年来,随着针对肺腺癌的治疗靶点研究的逐渐深入,肺腺癌的发生和转 移机制得到较大突破,尤其是在表观修饰方面近些年受到广泛关注。m6A甲 基化作为翻译后常见的一种修饰,与肿瘤发生发展密切相关。METTL7B作 为 m6A 甲基转移酶家族中的一员,对肺腺癌的发生发展具有重要影响。对 METTL7B 在肺癌发生发展中的作用进行深入研究,有助于揭示肺腺癌发展 的新机制,也有望发现新的调控分子网络和药物治疗靶标。 方法 使用RNA高通量测序检测30例肺腺癌临床样本组织中METTL7B的表 达情况,将METTL7B按照高低表达分为两组,通过GO富集和KEGG富集 分析肺腺癌组织中上调及下调的基因涉及的生物学功能和信号通路,分析 METTL7B 在肺癌发生和转移中的作用。同时通过联合 MeRIP-RNA 高通量 测序及RNA高通量测序结合分析METTL7B所介导的m6A修饰以及在RNA 转录及蛋白合成中的作用。运用GO,KEGG和 GSEA富集分析 METTL7B 影响的下游信号,分析METTL7B在肺腺癌发生发展中扮演中的角色。利用 Crispr Cas9 对肺腺癌细胞进行敲除 METTL7B以及过表达METTL7B的蛋白 模型构建,进而检测METTL7B对肺腺癌细胞的生长转移等生物学功能的影 响。最后通过RIP验证METTL7B对下游基因的甲基化作用。 结果 通过对临床肺腺癌样本组织的分析,我们发现与癌旁正常组织相比,肺 腺癌组织的METTL7B的表达量明显升高,与RNA-seq数据联合分析发现, 406 个表达上调以及28个表达下调。在这其中,有52个基因与METTL7B 存在强相关性,其中有37个基因呈正相关,有15个基因呈负相关。利用GO 对差异基因进行富集,提示METTL7B的功能与DNA复制、RNA甲基转移 酶活性有关。同时用KEGG进行富集,提示相关分子通路主要在碱基切除修 复、DNA 复制和 Hippo 信号通路中。结合 TIMER 数据库、TISIDB 数据库 以及临床样本,METTL7B与多种免疫分析相关,能够抑制肺腺癌免疫浸润, I 摘 要 促进免疫抑制。在细胞实验上,我们分别利用构建敲除和过表达METTL7B 稳转细胞系,证实METTL7B能够调控人肺腺癌细胞增殖和转移。在分子水 平上在分子水平上可以通过CDK2、CDK4等细胞周期蛋白促进细胞周期以 及调控N-cadherin、E-cadherin、Vimentin 等促进上皮间质转化。我们还发现, METTL7B 能够调控细胞的mRNA甲基化水平,在构建METTL7B敲除细胞 系后,联合METTL7B-KO MeRIP 与 RNA-seq 数据分析,METTL7B 缺失与 癌症的中心碳代谢、MAPK 途径和 ATP结合等代谢途径相关。通过测序我 们发现,METTL7B 能够调控 NTRK3 的甲基化修饰,qPCR 结果显示 METTL7B 下调 NTRK3 的表达,RIP 实验证实 METTL7B 参与 NTRK3 的 m6a 修饰从而影响NTRK3的基因表达水平。 结论 甲基转移酶METTL7B在肺腺癌中高表达,且高表达的METTL7B导致 肺腺癌患者预后不良。METTL7B不仅可调控肺腺癌细胞的细胞周期以及促 进肺腺癌细胞的迁移和侵袭,同时具有调控细胞 mRNA 甲基化的功能。结 合MeRIP 和 RNA-seq 分析以及体外实验,METTL7B可以调控NTRK3的甲 基化修饰,从而影响 NTRK3 的 mRNA的稳定性进而降低了其 mRNA水平 的表达。以上研究揭示METTL7B可能是肺腺癌转移的一个重要的分子标志 物,这些发现有助于更好地理解肺腺癌的生长转移机制,提供潜在的治疗靶 点。

关键词
语种
中文
培养类别
独立培养
入学年份
2021
学位授予年份
2024-05
参考文献列表

[参考文献
[1] SIEGEL R L, MILLER K D, JEMAL A. Cancer statistics, 2019 [J]. CA: A Cancer Journal for Clinicians, 2019, 69(1): 7-34.
[2] SIEGEL R L, MILLER K D, FUCHS H E, et al. Cancer Statistics, 2021 [J]. CA: A Cancer Journal for Clinicians, 2021, 71(1): 7-33.
[3] GANDARA D R, RIESS J W, KELLY K, et al. Evolution and Increasing Complexity of the Therapeutic Landscape in Advanced Non–Small-cell Lung Cancer [J]. Clinical Lung Cancer, 2017, 18(1): 1-4.
[4] YONEDA K, KUWATA T, KANAYAMA M, et al. Alteration in tumoural PD-L1 expression and stromal CD8-positive tumour-infiltrating lymphocytes after concurrent chemo-radiotherapy for non-small cell lung cancer [J]. British Journal of Cancer, 2019, 121(6): 490-6.
[5] DENISENKO T V, BUDKEVICH I N, ZHIVOTOVSKY B. Cell death-based treatment of lung adenocarcinoma [J]. Cell Death & Disease, 2018, 9(2).
[6] WANG S, SUN C, LI J, et al. Roles of RNA methylation by means of N6-methyladenosine (m6A) in human cancers [J]. Cancer Letters, 2017, 408: 112-20.
[7] HE L, LI J, WANG X, et al. The dual role of N6‐methyladenosine modification of RNAs is involved in human cancers [J]. Journal of Cellular and Molecular Medicine, 2018, 22(10): 4630-9.
[8] PANNEERDOSS S, EEDUNURI V K, YADAV P, et al. Cross-talk among writers, readers, and erasers of m6A regulates cancer growth and progression [J]. Science Advances, 2018, 4(10).
[9] ROUNDTREE I A, EVANS M E, PAN T, et al. Dynamic RNA Modifications in Gene Expression Regulation [J]. Cell, 2017, 169(7): 1187-200.
[10] UDDIN M B, WANG Z, YANG C. The m6A RNA methylation regulates oncogenic signaling pathways driving cell malignant transformation and carcinogenesis [J]. Molecular Cancer, 2021, 20(1).
[11] DESROSIERS R, FRIDERICI K, ROTTMAN F. Identification of Methylated Nucleosides in Messenger RNA from Novikoff Hepatoma Cells [J]. Proceedings of the National Academy of Sciences, 1974, 71(10): 3971-5.
[12] LIN S, CHOE J, DU P, et al. The m 6 A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells [J]. Molecular Cell, 2016, 62(3): 335-45.
[13] BARBIERI I, TZELEPIS K, PANDOLFINI L, et al. Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control [J]. Nature, 2017, 552(7683): 126-31.
[14] ZHAO X, YANG Y, SUN B-F, et al. FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis [J]. Cell Research, 2014, 24(12): 1403-19.
[15] STRICK A, VON HAGEN F, GUNDERT L, et al. The N6‐methyladenosine (m6A) erasers alkylation repair homologue 5 (ALKBH5) and fat mass and obesity‐associated protein (FTO) are prognostic biomarkers in patients with clear cell renal carcinoma [J]. BJU International, 2020, 125(4): 617-24.
[16] GONG D, ZHANG J, CHEN Y, et al. The m6A-suppressed P2RX6 activation promotes renal cancer cells migration and invasion through ATP-induced Ca2+ influx modulating ERK1/2 phosphorylation and MMP9 signaling pathway [J]. Journal of Experimental & Clinical Cancer Research, 2019, 38(1).
[17] WU C C, MACCOSS M J, MARDONES G, et al. Organellar Proteomics Reveals Golgi Arginine Dimethylation [J]. Molecular Biology of the Cell, 2004, 15(6): 2907-19.
[18] LI W, XU S, PENG N, et al. Downregulation of METTL7B Inhibits Proliferation of Human Clear Cell Renal Cancer Cells In Vivo and In Vitro [J]. Frontiers in Oncology, 2021, 11.
[19] LIU D, LI W, ZHONG F, et al. METTL7B Is Required for Cancer Cell Proliferation and Tumorigenesis in Non-Small Cell Lung Cancer [J]. Frontiers in Pharmacology, 2020, 11.
[20] LIU H, BEGIK O, LUCAS M C, et al. Accurate detection of m6A RNA modifications in native RNA sequences [J]. Nature Communications, 2019, 10(1).
[21] OU X, PU Q, SHENG S, et al. Electrochemical competitive immunodetection of messenger RNA modified with N6-methyladenosine by using DNA-modified mesoporous PtCo nanospheres [J]. 2019, (1436-5073 (Electronic)).
[22] WANG D O. Mapping m6A and m1A with mutation signatures [J]. Nature Methods, 2019, 16(12): 1213-4.
[23] BOULIAS K, GREER E L. Biological roles of adenine methylation in RNA [J]. Nature Reviews Genetics, 2022, 24(3): 143-60.
[24] MEYER KATE D, PATIL DEEPAK P, ZHOU J, et al. 5′ UTR m6A Promotes Cap-Independent Translation [J]. Cell, 2015, 163(4): 999-1010.
[25] YANG Y, HSU P J, CHEN Y-S, et al. Dynamic transcriptomic m6A decoration: writers, erasers, readers and functions in RNA metabolism [J]. Cell Research, 2018, 28(6): 616-24.
[26] PENDLETON K E, CHEN B, LIU K, et al. The U6 snRNA m 6 A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention [J]. Cell, 2017, 169(5): 824-35.e14.
[27] CHEN H, GU L, ORELLANA E A, et al. METTL4 is an snRNA m6Am methyltransferase that regulates RNA splicing [J]. Cell Research, 2020, 30(6): 544-7.
[28] MEYER KATE D, SALETORE Y, ZUMBO P, et al. Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons [J]. Cell, 2012, 149(7): 1635-46.
[29] HUANG H, WENG H, SUN W, et al. Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation [J]. Nature Cell Biology, 2018, 20(3): 285-95.
[30] EDUPUGANTI R R, GEIGER S, LINDEBOOM R G H, et al. N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis [J]. Nature Structural & Molecular Biology, 2017, 24(10): 870-8.
[31] ZHENG G, DAHL JOHN A, NIU Y, et al. ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility [J]. Molecular Cell, 2013, 49(1): 18-29.
[32] JIA G, FU Y, ZHAO X, et al. N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO [J]. Nature Chemical Biology, 2011, 7(12): 885-7.
[33] LENCE T, AKHTAR J, BAYER M, et al. m6A modulates neuronal functions and sex determination in Drosophila [J]. Nature, 2016, 540(7632): 242-7.
[34] HAUSSMANN I U, BODI Z, SANCHEZ-MORAN E, et al. m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination [J]. Nature, 2016, 540(7632): 301-4.
[35] XIAO W, ADHIKARI S, DAHAL U, et al. Nuclear m 6 A Reader YTHDC1 Regulates mRNA Splicing [J]. Molecular Cell, 2016, 61(4): 507-19.
[36] LIU N, DAI Q, ZHENG G, et al. N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions [J]. Nature, 2015, 518(7540): 560-4.
[37] ROUNDTREE I A, LUO G-Z, ZHANG Z, et al. YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs [J]. eLife, 2017, 6.
[38] DU H, ZHAO Y, HE J, et al. YTHDF2 destabilizes m6A-containing RNA through direct recruitment of the CCR4–NOT deadenylase complex [J]. Nature Communications, 2016, 7(1).
[39] PARK O H, HA H, LEE Y, et al. Endoribonucleolytic Cleavage of m6A-Containing RNAs by RNase P/MRP Complex [J]. Molecular Cell, 2019, 74(3): 494-507.e8.
[40] CHOI J, IEONG K-W, DEMIRCI H, et al. N6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics [J]. Nature Structural & Molecular Biology, 2016, 23(2): 110-5.
[41] ZHU Y, PENG X, ZHOU Q, et al. METTL3-mediated m6A modification of STEAP2 mRNA inhibits papillary thyroid cancer progress by blocking the Hedgehog signaling pathway and epithelial-to-mesenchymal transition [J]. Cell Death & Disease, 2022, 13(4).
[42] ZOU Y, ZHENG S, XIE X, et al. N6-methyladenosine regulated FGFR4 attenuates ferroptotic cell death in recalcitrant HER2-positive breast cancer [J]. Nature Communications, 2022, 13(1).
[43] WU Y, YANG X, CHEN Z, et al. m6A-induced lncRNA RP11 triggers the dissemination of colorectal cancer cells via upregulation of Zeb1 [J]. Molecular Cancer, 2019, 18(1).
[44] WEI W, HUO B, SHI X. miR-600 inhibits lung cancer via downregulating the expression of METTL3 [J]. Cancer Management and Research, 2019, Volume 11: 1177-87.
[45] JIN D, GUO J, WU Y, et al. RETRACTED ARTICLE: m6A mRNA methylation initiated by METTL3 directly promotes YAP translation and increases YAP activity by regulating the MALAT1-miR-1914-3p-YAP axis to induce NSCLC drug resistance and metastasis [J]. Journal of Hematology & Oncology, 2019, 12(1).
[46] ZHONG L, LIAO D, ZHANG M, et al. YTHDF2 suppresses cell proliferation and growth via destabilizing the EGFR mRNA in hepatocellular carcinoma [J]. Cancer Letters, 2019, 442: 252-61.
[47] CHEN M, WEI L, LAW C T, et al. RNA N6-methyladenosine methyltransferase-like 3 promotes liver cancer progression through YTHDF2-dependent posttranscriptional silencing of SOCS2 [J]. (1527-3350 (Electronic)).
[48] HOU J, ZHANG H, LIU J, et al. YTHDF2 reduction fuels inflammation and vascular abnormalization in hepatocellular carcinoma [J]. Molecular Cancer, 2019, 18(1).
[49] YUE B, SONG C, YANG L, et al. METTL3-mediated N6-methyladenosine modification is critical for epithelial-mesenchymal transition and metastasis of gastric cancer [J]. Molecular Cancer, 2019, 18(1).
[50] PENG W, LI J, CHEN R, et al. Upregulated METTL3 promotes metastasis of colorectal Cancer via miR-1246/SPRED2/MAPK signaling pathway [J]. Journal of Experimental & Clinical Cancer Research, 2019, 38(1).
[51] DENG R, CHENG Y, YE S, et al. A methyltransferase METTL3 suppresses colorectal cancer proliferation and migration through p38/ERK pathways [J]. OncoTargets and Therapy, 2019, Volume 12: 4391-402.
[52] TAKETO K, KONNO M, ASAI A, et al. The epitranscriptome m6A writer METTL3 promotes chemo- and radioresistance in pancreatic cancer cells [J]. International Journal of Oncology, 2017.
[53] LIU J, ECKERT M A, HARADA B T, et al. m6A mRNA methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer [J]. Nature Cell Biology, 2018, 20(9): 1074-83.
[54] WANG X, ZHANG J J, WANG Y. Long noncoding RNA GAS5-AS1 suppresses growth and metastasis of cervical cancer by increasing GAS5 stability [J]. Am J Transl Res, 2019, 11(8): 4909-21.
[55] LI Z, WENG H, SU R, et al. FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N 6 -Methyladenosine RNA Demethylase [J]. Cancer Cell, 2017, 31(1): 127-41.
[56] SU R, DONG L, LI C, et al. R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling [J]. Cell, 2018, 172(1-2): 90-105.e23.
[57] WENG H, HUANG H, WU H, et al. METTL14 Inhibits Hematopoietic Stem/Progenitor Differentiation and Promotes Leukemogenesis via mRNA m6A Modification [J]. Cell Stem Cell, 2018, 22(2): 191-205.e9.
[58] CUI Q, SHI H, YE P, et al. m 6 A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells [J]. Cell Reports, 2017, 18(11): 2622-34.
[59] WANG H, XU B, SHI J. N6-methyladenosine METTL3 promotes the breast cancer progression via targeting Bcl-2 [J]. (1879-0038 (Electronic)).
[60] ZHANG P, HE Q, LEI Y, et al. m6A-mediated ZNF750 repression facilitates nasopharyngeal carcinoma progression [J]. Cell Death & Disease, 2018, 9(12).
[61] ZHENG Z-Q, LI Z-X, ZHOU G-Q, et al. Long Noncoding RNA FAM225A Promotes Nasopharyngeal Carcinoma Tumorigenesis and Metastasis by Acting as ceRNA to Sponge miR-590-3p/miR-1275 and Upregulate ITGB3 [J]. Cancer Research, 2019, 79(18): 4612-26.
[62] YE D, JIANG Y, SUN Y, et al. METTL7B promotes migration and invasion in thyroid cancer through epithelial-mesenchymal transition [J]. (1479-6813 (Electronic)).
[63] IGNATOVA V V, JANSEN P W T C, BALTISSEN M P, et al. The interactome of a family of potential methyltransferases in HeLa cells [J]. Scientific Reports, 2019, 9(1).
[64] SONG H, LIU D, WANG L, et al. Methyltransferase like 7B is a potential therapeutic target for reversing EGFR-TKIs resistance in lung adenocarcinoma [J]. Molecular Cancer, 2022, 21(1).
[65] TANG B, YANG Y, KANG M, et al. m6A demethylase ALKBH5 inhibits pancreatic cancer tumorigenesis by decreasing WIF-1 RNA methylation and mediating Wnt signaling [J]. Molecular Cancer, 2020, 19(1).
[66] PARIS J, MORGAN M, CAMPOS J, et al. Targeting the RNA m6A Reader YTHDF2 Selectively Compromises Cancer Stem Cells in Acute Myeloid Leukemia [J]. Cell Stem Cell, 2019, 25(1): 137-48.e6.
[67] AN Y, DUAN H. The role of m6A RNA methylation in cancer metabolism [J]. (1476-4598 (Electronic)).
[68] LUNT S Y, VANDER HEIDEN M G. Aerobic glycolysis: meeting the metabolic requirements of cell proliferation [J]. (1530-8995 (Electronic)).
[69] MALUMBRES M, BARBACID M. Cell cycle, CDKs and cancer: a changing paradigm [J]. Nature Reviews Cancer, 2009, 9(3): 153-66.
[70] OTTO T, SICINSKI P. Cell cycle proteins as promising targets in cancer therapy [J]. Nature Reviews Cancer, 2017, 17(2): 93-115.
[71] SHERR C J, ROBERTS J M. Living with or without cyclins and cyclin-dependent kinases [J]. (0890-9369 (Print)).
[72] AU-YEUNG G, LANG F, AZAR W J, et al. Selective Targeting of Cyclin E1-Amplified High-Grade Serous Ovarian Cancer by Cyclin-Dependent Kinase 2 and AKT Inhibition [J]. Clinical Cancer Research, 2017, 23(7): 1862-74.
[73] GARTEL A L, DESAI B M, VILLANUEVA J, et al. The Anti-Melanoma Activity of Dinaciclib, a Cyclin-Dependent Kinase Inhibitor, Is Dependent on p53 Signaling [J]. PLoS ONE, 2013, 8(3).
[74] HWANG H C, CLURMAN B E. Cyclin E in normal and neoplastic cell cycles [J]. (0950-9232 (Print)).
[75] MOISEEVA T N, BAKKENIST C J. Regulation of the initiation of DNA replication in human cells [J]. (1568-7856 (Electronic)).
[76] BRACKEN C P, GOODALL G J. The many regulators of epithelial−mesenchymal transition [J]. Nature Reviews Molecular Cell Biology, 2021, 23(2): 89-90.
[77] HUANG T, LIU Z, ZHENG Y, et al. YTHDF2 promotes spermagonial adhesion through modulating MMPs decay via m6A/mRNA pathway [J]. Cell Death & Disease, 2020, 11(1).
[78] AMATU A, SARTORE-BIANCHI A, SIENA S. NTRK gene fusions as novel targets of cancer therapy across multiple tumour types [J]. ESMO Open, 2016, 1(2).
[79] WONG D, YIP S, SORENSEN P H. Methods for Identifying Patients with Tropomyosin Receptor Kinase (TRK) Fusion Cancer [J]. Pathology & Oncology Research, 2019, 26(3): 1385-99.
[80] TAUSZIG-DELAMASURE S, YU LY FAU - CABRERA J R, CABRERA JR FAU - BOUZAS-RODRIGUEZ J, et al. The TrkC receptor induces apoptosis when the dependence receptor notion meets the neurotrophin paradigm [J]. (0027-8424 (Print)).
[81] GROTZER M A, JANSS AJ FAU - PHILLIPS P C, PHILLIPS PC FAU - TROJANOWSKI J Q, et al. Neurotrophin receptor TrkC predicts good clinical outcome in medulloblastoma and other primitive neuroectodermal brain tumors [J]. (0300-8630 (Print)).
[82] KIM J Y, SUTTON ME FAU - LU D J, LU DJ FAU - CHO T A, et al. Activation of neurotrophin-3 receptor TrkC induces apoptosis in medulloblastomas [J]. (0008-5472 (Print)).
[83] JI H, LI K, JIANG W, et al. MRVI1 and NTRK3 Are Potential Tumor Suppressor Genes Commonly Inactivated by DNA Methylation in Cervical Cancer [J]. Frontiers in Oncology, 2022, 11.

所在学位评定分委会
生物学
国内图书分类号
R734.2
来源库
人工提交
成果类型学位论文
条目标识符http://sustech.caswiz.com/handle/2SGJ60CL/778863
专题南方科技大学医学院
推荐引用方式
GB/T 7714
刘成. 甲基化酶 METTL7B 对肺腺癌的发生转移作用机制研究[D]. 深圳. 南方科技大学,2024.
条目包含的文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可 操作
12133129-刘成-南方科技大学医学(6604KB)----限制开放--请求全文
个性服务
原文链接
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
导出为Excel格式
导出为Csv格式
Altmetrics Score
谷歌学术
谷歌学术中相似的文章
[刘成]的文章
百度学术
百度学术中相似的文章
[刘成]的文章
必应学术
必应学术中相似的文章
[刘成]的文章
相关权益政策
暂无数据
收藏/分享
所有评论 (0)
[发表评论/异议/意见]
暂无评论

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。