南方科技大学知识苑(SUSTech KC): CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics

题名	CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics
作者	Zhao, Yan 1,2,4 ; Kohl, Clemens 1; Rosebrock, Daniel 1; Hu, Qinan2,3,4 ; Hu, Yuhui2,3,4 ; Vingron, Martin 1
通讯作者	Vingron, Martin
发表日期	2024-06-01
DOI	10.1093/nar/gkae480
发表期刊	NUCLEIC ACIDS RESEARCH 影响因子和分区
ISSN	0305-1048
EISSN	1362-4962
摘要	["A fundamental analysis task for single-cell transcriptomics data is clustering with subsequent visualization of cell clusters. The genes responsible for the clustering are only inferred in a subsequent step. Clustering cells and genes together would be the remit of biclustering algorithms, which are often bogged down by the size of single-cell data. Here we present 'Correspondence Analysis based Biclustering on Networks' (CAbiNet) for joint clustering and visualization of single-cell RNA-sequencing data. CAbiNet performs efficient co-clustering of cells and their respective marker genes and jointly visualizes the biclusters in a non-linear embedding for easy and interactive visual exploration of the data.","Graphical Abstract"]
相关链接	[来源记录]
收录类别	SCI
语种	英语
学校署名	其他
资助项目	Shenzhen Science and Technology Program [China][KQTD 20180411143432337] ; Shenzhen Key Laboratory of Gene Regulation and Systems Biology [China][ZDSYS 20200811144002008] ; National Natural Science Foundation of China["82373975","32100684"]
WOS研究方向	Biochemistry & Molecular Biology
WOS类目	Biochemistry & Molecular Biology
WOS记录号	WOS:001240512400001
出版者	OXFORD UNIV PRESS
ESI学科分类	BIOLOGY & BIOCHEMISTRY
来源库	Web of Science
引用统计
成果类型	期刊论文
条目标识符	http://sustech.caswiz.com/handle/2SGJ60CL/788190
专题	南方科技大学医学院_药理学系生命科学学院南方科技大学医学院
作者单位	1.Max Planck Inst Mol Genet, Dept Computat Mol Biol, Ihnestr 63, D-14195 Berlin, Germany 2.Southern Univ Sci & Technol, Sch Med, Dept Pharmacol, 1088 Xueyuan Ave, Shenzhen 518000, Guangdong, Peoples R China 3.Joint Lab Guangdong Hong Kong Univ Vasc Homeostasi, Southern Univ Sci & Technol, Sch Med, 1088 Xueyuan Ave, Shenzhen 518055, Guangdong, Peoples R China 4.Southern Univ Sci & Technol, Sch Life Sci, Shenzhen Key Lab Gene Regulat & Syst Biol, 1088 Xueyuan Ave, Shenzhen 518055, Guangdong, Peoples R China
第一作者单位	药理学系; 南方科技大学医学院; 生命科学学院
推荐引用方式 GB/T 7714	Zhao, Yan,Kohl, Clemens,Rosebrock, Daniel,et al. CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics[J]. NUCLEIC ACIDS RESEARCH,2024.
APA	Zhao, Yan,Kohl, Clemens,Rosebrock, Daniel,Hu, Qinan,Hu, Yuhui,&Vingron, Martin.(2024).CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics.NUCLEIC ACIDS RESEARCH.
MLA	Zhao, Yan,et al."CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics".NUCLEIC ACIDS RESEARCH (2024).